Computational Bioinformatics and Bio-imaging Laboratory


 

 

Full-Time Faculty
Research Scientist

  • Zuyi Wang , Ph.D. (biomedical engineering): Networked gene-pathway association, IDMD project, proteomics data analysis, SNP associative analysis by machine learning

  • Jianghui Xiong , M.S. (cell biology): Multilevel/multiscale data, knowledge, evidence discovery and integration; associative analysis; miRNA and DNA methylation

 
Graduate Research Assistant

    COMPUTATIONAL GENOMICS

  • Yuanjian Feng (doctoral graduate research assistant, Fall 2004 - present): CNV detection, CIN index/feature extraction, tree of phenotype (stability analysis), SNP detection and assessment (SVM-SFFS/RPT)

  • Ting Gong (doctoral graduate research assistant, Fall 2004 - present): Computational dissection of composite molecular signatures and modules (nPICA-THC, nICA/nPICA GRN modeling)

  • Lily Li Chen (doctoral graduate research assistant, Spring 2007 - present): Knowledge-driven biomarker discovery and validation; multi-level data integartion for regualtory network reconstruction

  • Guoqiang Yu (doctoral graduate research assistant, Fall 2006 - present): Stage-2 SNP/GEI complex interaction , inference of complex interaction models, CNV detection, PUG-OVRSVM

  • Li Chen (doctoral graduate research assistant, Fall 2006 - present): Discrete-field nonlinear classification and RPT (SVM/kNN/MLP/MECPM), DCE-MRI (NSC-CAM) , Stage-1 SNP screening

  • Lei Song (doctoral graduate research assistant, Fall 2008 - present): Practice of real SNP data analysis, CNV detection and CNV-feature extraction, inference of complex interaction models

    • COMPUTATIONAL BIOLOGY AND EPIGENETICS

  • Yitan Zhu (doctoral graduate research assistant, Spring 2004 - present): VISDA, multi-task data clustering, unmixing differential gene expression programs, tissue heterogeneity correction

  • Bai Zhang (doctoral graduate research assistant, Fall 2006 - present): DDN, ESRNN , CAM-nWCA of pathway composite, CNV detection (SFNM-EM-MDL-HMM-MICM), THC, epigenetics

  • Chen Wang (doctoral graduate research assistant, Fall 2006 - present): Integrative netwrok analysis for pathway dissection; regulatory network reconstruction by mNCA; gene module discovery by ICA

  • Yuji Zhang (doctoral graduate research assistant, Fall 2005 - present): Inferring gene regulatory network by recurrent neural networks and swarm intelligence; netwrok motif analysis; protein-protein interactions (PPIs) for pathway building

    • COMPUTATIONAL BIOMEDICAL IMAGING

  • Chu-Chuan (JJ) Liu (doctoral graduate student, Fall 2003 - present): Transmission and reflective ultrasound projection and tomographic imaging

  • Bin Zhou (doctoral graduate research assistant, Fall 2006 - present): Polarization cellular/tissue imaging (feature extraction and classification); multispectral polarization imaging; motion analysis for adaptive radiation therapy

  • Tsung-Han Chan (visiting doctoral graduate research assistant, Summer 2007, Spring 2008 - present): Blind source separation theory and algorithm, dissection/characterization of DCE-MRI, optical imaging, dPET, fMRI

  • Yimo Tao (doctoral graduate research assistant, Fall 2006 - present): Content-based medical image analysis, understanding, and retrieval

 
Additional Graduate Student

  • Sook S. Ha (doctoral graduate student, Fall 2006 - present): Statistical learning and informational visualization for bioinformatics

  • Lu Jin (full-time master graduate student, Spring 2008 - present): Cluster computing for genomic data analysis

  • Charles S. Bartlett (part-time doctoral graduate student, Spring 2008 - present): CNV detection and CNV-feature extraction, microarray data analysis

  • Yibin Dong (part-time doctoral graduate student, Fall 2004 - present): Compute cluster server based biomedical computing, molecular marker discovery and validation

  • Jane Liu (part-time doctoral graduate student, Fall 2002 - present): Grid-enabled data storage and management for biomedical research

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    CBIL Guidelines
    (Document)
     

     

     

     

     

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